PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G038073_P01
Common NameLOC100383487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 399aa    MW: 44936.4 Da    PI: 4.9022
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G038073_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.12.2e-29572011128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                        lp+G++F+P++ el+ e+L++kv   +      +  +e+i+++d    i++++P++Lp  +k++ ++ +fF++ +k+y  g+rk+r      
  GRMZM2G038073_P01  57 LPAGVKFDPSELELL-EHLEQKVGLGDsrphvlI--DEFIPTIDndegICYSHPENLP-GMKTDGSNAHFFHRVSKAYGCGQRKRRRtincs 144
                        799************.99****987776776443..333444433444**********.7788899********************657888 PP

                NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              ++ +W++tg++k++++ +g  +g kk++v+y  ++r +k+ +++Wvmh+y+l
  GRMZM2G038073_P01 145 dhtvsDEHVRWHKTGRSKAIYE-NGVIKGWKKIMVLYkiSQRGRKPDRANWVMHQYHL 201
                        8766555899************.999***********6646777888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-3642220IPR003441NAC domain
PROSITE profilePS5100528.52757220IPR003441NAC domain
PfamPF023655.0E-1258201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MARSWLITCR GIAKKIRYTN PGANHHISEL VAEARRECPN CSYIIDNSDV AMQWPGLPAG  60
VKFDPSELEL LEHLEQKVGL GDSRPHVLID EFIPTIDNDE GICYSHPENL PGMKTDGSNA  120
HFFHRVSKAY GCGQRKRRRT INCSDHTVSD EHVRWHKTGR SKAIYENGVI KGWKKIMVLY  180
KISQRGRKPD RANWVMHQYH LGEEEDEKDG ELVVSKIFCQ LPNKSMEISE TETAYEEPGA  240
PASVIGPKTP KTVTPQPRHP KNSPCETEQS IFILQDQLLL DGEDEPTMPI VSLADDAMNP  300
AWCAVAEEEQ VVGEASRAQS NSDEPLLCRE DPNSLNDEAL LPWDYPILSQ CRSEIFDRNL  360
NGYGLPDLHN VDLGTPPDLQ LADFQFGSQE SLGSWLDRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138RKRRR
2134139RKRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1253630.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G038073
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G038073_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4284830.0JX428483.1 Zea mays subsp. mays clone pUT3080 NAC13 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169606.10.0uncharacterized protein LOC100383487
SwissprotQ6NQK22e-77NAC8_ARATH; NAC domain-containing protein 8
TrEMBLK0D9P00.0K0D9P0_MAIZE; NAC13 NAC type transcription factor (Fragment)
TrEMBLA0A096QE150.0A0A096QE15_MAIZE; Uncharacterized protein
STRINGGRMZM2G038073_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.12e-70NAC domain containing protein 44